If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ), 'gf_id' => 'HOM05D000808', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000808' ), 'data_identifier' => 'HOM05D000808', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000808', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '730', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p04760' => 'bna', 'A01p20670' => 'bna', 'A02p44430' => 'bna', 'A04p22950' => 'bna', 'A06p21080' => 'bna', 'A07p17220' => 'bna', 'Aa31LG1G15260' => 'aar', 'Aa31LG2G12710' => 'aar', 'Aa31LG5G6510' => 'aar', 'Aa31LG9G12210' => 'aar', 'Aa31sc568G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2226' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2227' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.387' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.517' => 'aag', 'Actinidia09289' => 'ach', 'Actinidia09290' => 'ach', 'Actinidia14091' => 'ach', 'Actinidia15310' => 'ach', 'Actinidia19168' => 'ach', 'Actinidia22176' => 'ach', 'Actinidia22560' => 'ach', 'Actinidia22561' => 'ach', 'Actinidia23204' => 'ach', 'Actinidia28062' => 'ach', 'Actinidia29834' => 'ach', 'Actinidia32615' => 'ach', 'Actinidia38018' => 'ach', 'Actinidia39184' => 'ach', 'Actinidia39185' => 'ach', 'Ah.03g139320' => 'amhyb', 'AL4G25000' => 'aly', 'AL7G18040' => 'aly', 'AL7G38190' => 'aly', 'AL8G44750' => 'aly', 'Aqoxy2G00793' => 'aox', 'Aqoxy2G02106' => 'aox', 'Aqoxy5G01681' => 'aox', 'Aqoxy6G00573' => 'aox', 'Aqoxy6G01039' => 'aox', 'Aqoxy6G01525' => 'aox', 'Aqoxy6G01528' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2J0DRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5G68FD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5TF5AY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S1TXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXB7EJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0NQML' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EIFC1U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GJK82C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ILUI4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1JTDU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1WGVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7WEV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PSG2M4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R1GXAR' => 'arhy', 'AT2G30170' => 'ath', 'AT4G16580' => 'ath', 'AT4G33500' => 'ath', 'AT5G66720' => 'ath', 'ATR0174G037' => 'atr', 'ATR0564G392' => 'atr', 'ATR0733G158' => 'atr', 'Atru.BG.110.p' => 'acertr', 'Atru.chr11.152' => 'acertr', 'Atru.chr11.2175' => 'acertr', 'Atru.chr13.519' => 'acertr', 'Atru.chr13.525' => 'acertr', 'Atru.chr3.1862' => 'acertr', 'Atru.chr4.1031' => 'acertr', 'Atru.chr4.1032' => 'acertr', 'Atru.chr4.1034' => 'acertr', 'Atru.chr4.1037' => 'acertr', 'Atru.chr4.1041' => 'acertr', 'Atru.chr4.1052' => 'acertr', 'Atru.chr4.1058' => 'acertr', 'Atru.chr4.1061' => 'acertr', 'Atru.chr4.1065' => 'acertr', 'Atru.chr4.2632' => 'acertr', 'Atru.chr4.2633' => 'acertr', 'Atru.chr6.1128' => 'acertr', 'Atru.chr6.1129' => 'acertr', 'AUR62001881' => 'cqu', 'AUR62003181' => 'cqu', 'AUR62006519' => 'cqu', 'AUR62008001' => 'cqu', 'AUR62027374' => 'cqu', 'AUR62031291' => 'cqu', 'BcaB02g09997' => 'bca', 'BcaB02g10306' => 'bca', 'BcaC02g11101' => 'bca', 'BcaC03g18404' => 'bca', 'BcaC03g18405' => 'bca', 'BcaC06g34595' => 'bca', 'BcaC06g34736' => 'bca', 'BcaC09g50375' => 'bca', 'BcaC09g52167' => 'bca', 'BcaNung00169' => 'bca', 'BolC1t00497H' => 'bol', 'BolC1t02556H' => 'bol', 'BolC7t43039H' => 'bol', 'BraA01t00459Z' => 'bra', 'BraA01t01999Z' => 'bra', 'BraA04t17830Z' => 'bra', 'BraA05t20445Z' => 'bra', 'BraA06t25195Z' => 'bra', 'BraA07t29449Z' => 'bra', 'C01p05170' => 'bna', 'C01p26120' => 'bna', 'C02p64830' => 'bna', 'C07p25080' => 'bna', 'C07p26720' => 'bna', 'CAN.G1126.35' => 'can', 'CAN.G1139.9' => 'can', 'CAN.G1569.25' => 'can', 'CAN.G1656.14' => 'can', 'CAN.G1678.4' => 'can', 'CAN.G243.1' => 'can', 'CAN.G243.2' => 'can', 'CAN.G243.3' => 'can', 'CAN.G243.7' => 'can', 'CAN.G324.4' => 'can', 'CAN.G337.105' => 'can', 'CAN.G424.11' => 'can', 'CAN.G523.88' => 'can', 'CAN.G623.24' => 'can', 'CAN.G700.10' => 'can', 'CAN.G700.11' => 'can', 'CAN.G700.12' => 'can', 'CAN.G700.13' => 'can', 'CAN.G700.5' => 'can', 'CAN.G8.43' => 'can', 'CANSAT01G1292' => 'cansat', 'CANSAT11G0349' => 'cansat', 'CANSAT25G2039' => 'cansat', 'CANSAT25G2368' => 'cansat', 'CANSAT35G0180' => 'cansat', 'CANSAT35G1310' => 'cansat', 'CANSAT35G1423' => 'cansat', 'CANSAT35G1649' => 'cansat', 'CANSAT35G2030' => 'cansat', 'CANSAT54G1294' => 'cansat', 'CANSAT54G1948' => 'cansat', 'CANSAT80G1469' => 'cansat', 'CANSAT80G2795' => 'cansat', 'CARHR123490' => 'chi', 'CARHR223070' => 'chi', 'CARHR223080' => 'chi', 'CARHR241600' => 'chi', 'CARHR281000' => 'chi', 'Carub.0004s1133' => 'cru', 'Carub.0007s0696' => 'cru', 'Carub.0007s2482' => 'cru', 'Carub.0008s2778' => 'cru', 'Ca_00126_v3' => 'car', 'Ca_00391_v3' => 'car', 'Ca_13345_v3' => 'car', 'Ca_15004_v3' => 'car', 'CBR_g32289' => 'cbr', 'CBR_g3675' => 'cbr', 'Cc01_g14790' => 'ccan', 'Cc01_g15450' => 'ccan', 'Cc02_g21730' => 'ccan', 'Cc06_g18480' => 'ccan', 'Cc07_g09210' => 'ccan', 'Cc10_g03160' => 'ccan', 'CDE01G0337' => 'cde', 'CDE02G2426' => 'cde', 'CDE02G3867' => 'cde', 'CDE04G2355' => 'cde', 'CDE04G2386' => 'cde', 'CDE07G0266' => 'cde', 'CDE10G0281' => 'cde', 'Cfa004282' => 'cfa', 'Cfa011770' => 'cfa', 'Cfa011981' => 'cfa', 'Cfa015708' => 'cfa', 'Cfa015709' => 'cfa', 'Cfa018131' => 'cfa', 'Cfa019542' => 'cfa', 'Cfa019554' => 'cfa', 'Cfa024101' => 'cfa', 'Ciclev10000910m.g' => 'ccl', 'Ciclev10025600m.g' => 'ccl', 'Ciclev10028878m.g' => 'ccl', 'CiPaw.01G034900' => 'cil', 'CiPaw.05G038000' => 'cil', 'CiPaw.11G118900' => 'cil', 'CiPaw.14G054600' => 'cil', 'CiPaw.15G074500' => 'cil', 'CiPaw.16G054900' => 'cil', 'ClCG03G000350' => 'cla', 'ClCG05G019160' => 'cla', 'ClCG07G009010' => 'cla', 'ClCG11G017290' => 'cla', 'ClCG11G017410' => 'cla', 'ClCG11G017420' => 'cla', 'COL.COLO4_05751' => 'col', 'COL.COLO4_05867' => 'col', 'COL.COLO4_10730' => 'col', 'COL.COLO4_11140' => 'col', 'COL.COLO4_22114' => 'col', 'COL.COLO4_26351' => 'col', 'COL.COLO4_33855' => 'col', 'COL.COLO4_34321' => 'col', 'Cpa.g.sc14.253' => 'cpa', 'Cpa.g.sc158.2' => 'cpa', 'Cpa.g.sc2.366' => 'cpa', 'Cpa.g.sc64.64' => 'cpa', 'Cpa.g.sc77.28' => 'cpa', 'Cpa.g.sc793.1' => 'cpa', 'Cre01.g009700' => 'cre', 'Cre01.g010250' => 'cre', 'Cre01.g036200' => 'cre', 'Cre03.g158050' => 'cre', 'Cre06.g256300' => 'cre', 'Cre06.g257850' => 'cre', 'Cre07.g334750' => 'cre', 'CsaV3_1G036560' => 'csa', 'CsaV3_3G044950' => 'csa', 'CsaV3_4G005210' => 'csa', 'CsaV3_4G032940' => 'csa', 'CsaV3_4G033070' => 'csa', 'CsaV3_4G033080' => 'csa', 'CSS0005718' => 'camsi', 'CSS0018946' => 'camsi', 'CSS0021657' => 'camsi', 'CSS0027953' => 'camsi', 'CSS0028030' => 'camsi', 'CSS0032058' => 'camsi', 'CSS0036795' => 'camsi', 'CSS0044045' => 'camsi', 'DCAR_004916' => 'dca', 'DCAR_007348' => 'dca', 'DCAR_017242' => 'dca', 'DCAR_019515' => 'dca', 'DCAR_020530' => 'dca', 'DCAR_020531' => 'dca', 'DCAR_020965' => 'dca', 'DCAR_021848' => 'dca', 'Dinv01637' => 'din', 'Dinv24207' => 'din', 'Dinv28691' => 'din', 'Dinv36057' => 'din', 'Dinv38819' => 'din', 'Dinv39397' => 'din', 'Dinv39961' => 'din', 'Duzib084G0391' => 'dzi', 'Duzib116G0232' => 'dzi', 'Duzib132G0787' => 'dzi', 'Duzib147G1697' => 'dzi', 'Duzib168G1180' => 'dzi', 'Duzib205G1211' => 'dzi', 'Duzib264G0793' => 'dzi', 'ECA232G3946' => 'eca', 'ECA234G0410' => 'eca', 'ECA246G1950' => 'eca', 'ECA246G2831' => 'eca', 'ECA248G2822' => 'eca', 'EL10Ac6g14914' => 'bvu', 'EL10Ac7g15911' => 'bvu', 'EL10Ac8g19350' => 'bvu', 'Eucgr.A00501' => 'egr', 'Eucgr.H01259' => 'egr', 'Eucgr.I02678' => 'egr', 'Eucgr.J01861' => 'egr', 'FAN04G0791' => 'fan', 'FAN04G2313' => 'fan', 'FAN08G0934' => 'fan', 'FAN11G0867' => 'fan', 'FAN11G1229' => 'fan', 'FAN13G1745' => 'fan', 'FAN15G1022' => 'fan', 'FAN16G1910' => 'fan', 'FAN16G2330' => 'fan', 'FAN18G1470' => 'fan', 'FAN18G1886' => 'fan', 'FAN19G2372' => 'fan', 'FAN21G0741' => 'fan', 'FAN21G1064' => 'fan', 'FAN21G1066' => 'fan', 'FAN23G2646' => 'fan', 'FAN25G0311' => 'fan', 'FAN25G2004' => 'fan', 'FAN25G2598' => 'fan', 'FAN26G0356' => 'fan', 'FAN27G0835' => 'fan', 'FAN28G2408' => 'fan', 'FvH4_1g13720' => 'fve', 'FvH4_2g40080' => 'fve', 'FvH4_3g11080' => 'fve', 'FvH4_3g11340' => 'fve', 'FvH4_3g39680' => 'fve', 'FvH4_5g14800' => 'fve', 'FvH4_5g30930' => 'fve', 'Glyma.01G177066' => 'gma', 'Glyma.01G177132' => 'gma', 'Glyma.02G058600' => 'gma', 'Glyma.11G065900' => 'gma', 'Glyma.11G164300' => 'gma', 'Glyma.14G076700' => 'gma', 'Glyma.15G052300' => 'gma', 'Glyma.16G141200' => 'gma', 'Glyma.17G249100' => 'gma', 'Glyma.18G057500' => 'gma', 'Gohir.A01G116900' => 'ghi', 'Gohir.A02G164000' => 'ghi', 'Gohir.A03G172600' => 'ghi', 'Gohir.A05G108900' => 'ghi', 'Gohir.A05G195800' => 'ghi', 'Gohir.A08G112250' => 'ghi', 'Gohir.A11G185900' => 'ghi', 'Gohir.D01G105600' => 'ghi', 'Gohir.D02G195800' => 'ghi', 'Gohir.D03G016200' => 'ghi', 'Gohir.D05G109000' => 'ghi', 'Gohir.D05G198900' => 'ghi', 'Gohir.D08G125200' => 'ghi', 'Gohir.D11G192500' => 'ghi', 'Gorai.002G129300' => 'gra', 'Gorai.003G016400' => 'gra', 'Gorai.004G132100' => 'gra', 'Gorai.005G218800' => 'gra', 'Gorai.007G205500' => 'gra', 'Gorai.009G113300' => 'gra', 'Gorai.009G204100' => 'gra', 'GSVIVG01007904001' => 'vvi', 'GSVIVG01008770001' => 'vvi', 'GSVIVG01009670001' => 'vvi', 'GSVIVG01019004001' => 'vvi', 'GSVIVG01024641001' => 'vvi', 'GSVIVG01029794001' => 'vvi', 'GSVIVG01033263001' => 'vvi', 'HanXRQChr05g0132391' => 'han', 'HanXRQChr05g0151831' => 'han', 'HanXRQChr06g0173661' => 'han', 'HanXRQChr09g0268581' => 'han', 'HanXRQChr10g0292641' => 'han', 'Haze_00806' => 'cav', 'Haze_00807' => 'cav', 'Haze_09092' => 'cav', 'Haze_09295' => 'cav', 'Haze_09303' => 'cav', 'Haze_09313' => 'cav', 'Haze_09320' => 'cav', 'Haze_10640' => 'cav', 'Haze_15118' => 'cav', 'Haze_17995' => 'cav', 'Haze_24405' => 'cav', 'Hma1.2p1_0005F.1_g004470' => 'hma', 'Hma1.2p1_0005F.1_g004480' => 'hma', 'Hma1.2p1_0203F.1_g086560' => 'hma', 'Hma1.2p1_0217F.1_g091840' => 'hma', 'Hma1.2p1_0619F.1_g190420' => 'hma', 'Hma1.2p1_0691F.1_g204115' => 'hma', 'Hma1.2p1_0905F.1_g235330' => 'hma', 'HPP92_001602' => 'vpl', 'HPP92_006775' => 'vpl', 'HPP92_009237' => 'vpl', 'HPP92_021308' => 'vpl', 'Hund05027' => 'sun', 'Hund14142' => 'sun', 'Hund16580' => 'sun', 'Lalb_Chr03g0031651' => 'lal', 'Lalb_Chr09g0322561' => 'lal', 'Lalb_Chr14g0369131' => 'lal', 'Lalb_Chr15g0083241' => 'lal', 'Lalb_Chr15g0090481' => 'lal', 'Lalb_Chr22g0355441' => 'lal', 'Lalb_Chr22g0355451' => 'lal', 'Lj2A392T41' => 'lonja', 'Lj2C1092T16' => 'lonja', 'Lj2g0024610' => 'lja', 'Lj4A783T83' => 'lonja', 'Lj4C198T0' => 'lonja', 'Lj5g0006239' => 'lja', 'Lj6g0010859' => 'lja', 'Lj6g0023358' => 'lja', 'Lj7C557G17' => 'lonja', 'Lj7C557T18' => 'lonja', 'Lj7P557T24' => 'lonja', 'Lj7P559T47' => 'lonja', 'Lj7P559T83' => 'lonja', 'Lj9A320T32' => 'lonja', 'Lj9A348T67' => 'lonja', 'Lju1163A0G50' => 'lonja', 'Lsat_1_v5_gn_3_21881' => 'lsa', 'Lsat_1_v5_gn_4_122020' => 'lsa', 'Lsat_1_v5_gn_5_106961' => 'lsa', 'Lsat_1_v5_gn_5_174581' => 'lsa', 'Manes.05G162400' => 'mes', 'Manes.12G089902' => 'mes', 'Manes.14G167000' => 'mes', 'Manes.18G028900' => 'mes', 'Manes.18G142800' => 'mes', 'Mapoly0007s0047' => 'mpo', 'Mapoly0012s0189' => 'mpo', 'Mapoly0052s0051' => 'mpo', 'Mapoly0071s0101' => 'mpo', 'MBI02_g30887_MAGBIO' => 'mbi', 'MBI03_g38982_MAGBIO' => 'mbi', 'MBI16_g35700_MAGBIO' => 'mbi', 'MCO01G634' => 'mco', 'MCO01G722' => 'mco', 'MD02G1151900' => 'mdo', 'MD03G1055500' => 'mdo', 'MD08G1032700' => 'mdo', 'MD08G1210800' => 'mdo', 'MD08G1221000' => 'mdo', 'MD11G1056600' => 'mdo', 'MD11G1261400' => 'mdo', 'MD15G1029400' => 'mdo', 'MD15G1266300' => 'mdo', 'MD15G1411700' => 'mdo', 'MD16G1277900' => 'mdo', 'Medtr1g022030' => 'mtr', 'Medtr2g008590' => 'mtr', 'Medtr2g078940' => 'mtr', 'Medtr3g031360' => 'mtr', 'Medtr5g019790' => 'mtr', 'MELO3C003875.2' => 'cme', 'MELO3C014772.2' => 'cme', 'MELO3C017546.2' => 'cme', 'MELO3C020512.2' => 'cme', 'MELO3C025644.2' => 'cme', 'MELO3C025655.2' => 'cme', 'Migut.B00626' => 'egut', 'Migut.C00702' => 'egut', 'Migut.D00850' => 'egut', 'Migut.H00184' => 'egut', 'Migut.H00848' => 'egut', 'Migut.I00841' => 'egut', 'Migut.J01692' => 'egut', 'Migut.J01693' => 'egut', 'Migut.J01694' => 'egut', 'Migut.J01695' => 'egut', 'Migut.N00503' => 'egut', 'MSTRG.18550' => 'ama', 'MSTRG.23547' => 'ama', 'MSTRG.24298' => 'ama', 'Nitab4.5_0000082g0430' => 'nta', 'Nitab4.5_0000110g0460' => 'nta', 'Nitab4.5_0000166g0040' => 'nta', 'Nitab4.5_0000397g0360' => 'nta', 'Nitab4.5_0000562g0040' => 'nta', 'Nitab4.5_0000592g0030' => 'nta', 'Nitab4.5_0000622g0250' => 'nta', 'Nitab4.5_0000653g0100' => 'nta', 'Nitab4.5_0000677g0070' => 'nta', 'Nitab4.5_0000790g0130' => 'nta', 'Nitab4.5_0000967g0010' => 'nta', 'Nitab4.5_0002296g0020' => 'nta', 'Nitab4.5_0002865g0010' => 'nta', 'Nitab4.5_0003246g0040' => 'nta', 'Nitab4.5_0003434g0060' => 'nta', 'Nitab4.5_0003561g0060' => 'nta', 'Nitab4.5_0004174g0070' => 'nta', 'Nitab4.5_0004600g0020' => 'nta', 'Nitab4.5_0005106g0040' => 'nta', 'Nitab4.5_0009392g0030' => 'nta', 'Nitab4.5_0009394g0030' => 'nta', 'Nitab4.5_0009551g0020' => 'nta', 'Nitab4.5_0010245g0010' => 'nta', 'Nitab4.5_0010245g0020' => 'nta', 'Nn1g05076' => 'nnu', 'Nn2g14240' => 'nnu', 'Nn5g29039' => 'nnu', 'Oeu006453.1' => 'oeu', 'Oeu007950.1' => 'oeu', 'Oeu007952.1' => 'oeu', 'Oeu009865.2' => 'oeu', 'Oeu016739.1' => 'oeu', 'Oeu021562.1' => 'oeu', 'Oeu025461.1' => 'oeu', 'Oeu026169.4' => 'oeu', 'Oeu027587.1' => 'oeu', 'Oeu032361.1' => 'oeu', 'Oeu037893.1' => 'oeu', 'Oeu038854.1' => 'oeu', 'Os01g0164600' => 'osa', 'Os02g0633700' => 'osa', 'Os02g0633900' => 'osa', 'Os03g0192500' => 'osa', 'Os03g0809300' => 'osa', 'Os10g0370000' => 'osa', 'Peaxi162Scf00001g00027' => 'pax', 'Peaxi162Scf00002g00374' => 'pax', 'Peaxi162Scf00002g00375' => 'pax', 'Peaxi162Scf00053g01517' => 'pax', 'Peaxi162Scf00057g00419' => 'pax', 'Peaxi162Scf00062g00074' => 'pax', 'Peaxi162Scf00064g00433' => 'pax', 'Peaxi162Scf00071g01021' => 'pax', 'Peaxi162Scf00450g00085' => 'pax', 'Peaxi162Scf00592g00001' => 'pax', 'Peaxi162Scf00592g00010' => 'pax', 'Peaxi162Scf00901g00045' => 'pax', 'Peaxi162Scf01586g00004' => 'pax', 'Peaxi162Scf08173g00001' => 'pax', 'PGR031G0921' => 'pgr', 'PGR102G2979' => 'pgr', 'PGR119G1417' => 'pgr', 'PGR142G0261' => 'pgr', 'PGSC0003DMG400001094' => 'stu', 'PGSC0003DMG400001795' => 'stu', 'PGSC0003DMG400005149' => 'stu', 'PGSC0003DMG400008165' => 'stu', 'PGSC0003DMG400011718' => 'stu', 'PGSC0003DMG400012566' => 'stu', 'PGSC0003DMG400019368' => 'stu', 'PGSC0003DMG400019373' => 'stu', 'PGSC0003DMG400020560' => 'stu', 'PGSC0003DMG400036893' => 'stu', 'PGSC0003DMG400044803' => 'stu', 'PGSC0003DMG400046096' => 'stu', 'PGSC0003DMG401013921' => 'stu', 'PGSC0003DMG402013921' => 'stu', 'PGSC0003DMG402015455' => 'stu', 'Phvul.001G015900' => 'pvu', 'Phvul.002G028000' => 'pvu', 'Phvul.003G252300' => 'pvu', 'Phvul.006G073500' => 'pvu', 'Phvul.006G207400' => 'pvu', 'Potri.001G089201' => 'ptr', 'Potri.001G282500' => 'ptr', 'Potri.001G381000' => 'ptr', 'Potri.005G125700' => 'ptr', 'Potri.007G028900' => 'ptr', 'Potri.009G021300' => 'ptr', 'Potri.011G013000' => 'ptr', 'Potri.011G102200' => 'ptr', 'Potri.014G042800' => 'ptr', 'Pp3c11_21190' => 'ppa', 'Pp3c11_760' => 'ppa', 'Pp3c1_200' => 'ppa', 'Pp3c26_8650' => 'ppa', 'PRCOL_00000100' => 'pco', 'PRCOL_00002885' => 'pco', 'Prupe.1G382000' => 'ppe', 'Prupe.1G557900' => 'ppe', 'Prupe.4G157000' => 'ppe', 'Prupe.4G166600' => 'ppe', 'Prupe.4G166700' => 'ppe', 'Prupe.4G166900' => 'ppe', 'Prupe.4G167000' => 'ppe', 'Prupe.5G049700' => 'ppe', 'Prupe.6G049100' => 'ppe', 'Prupe.7G151100' => 'ppe', 'Psat1g216960' => 'psa', 'Psat2g161080' => 'psa', 'Psat5g153360' => 'psa', 'Psat6g007440' => 'psa', 'PSO170G3732' => 'pso', 'PSO339G2464' => 'pso', 'PSO339G4786' => 'pso', 'PSO384G0887' => 'pso', 'PSO541G5282' => 'pso', 'PSO675G5245' => 'pso', 'PSO700G0166' => 'pso', 'PSO801G0673' => 'pso', 'QL01p026446' => 'qlo', 'QL02p007794' => 'qlo', 'QL02p030017' => 'qlo', 'QL05p039911' => 'qlo', 'QL05p054694' => 'qlo', 'QL05p054725' => 'qlo', 'QL05p054758' => 'qlo', 'QL06p045409' => 'qlo', 'QL11p019837' => 'qlo', 'RcHm_v2.0_Chr2g0102131' => 'rch', 'RcHm_v2.0_Chr5g0015721' => 'rch', 'RcHm_v2.0_Chr5g0018291' => 'rch', 'RcHm_v2.0_Chr5g0071531' => 'rch', 'RcHm_v2.0_Chr6g0300681' => 'rch', 'RcHm_v2.0_Chr7g0226241' => 'rch', 'Rhsim02G0246600' => 'rsi', 'Rhsim03G0031600' => 'rsi', 'Rhsim03G0031700' => 'rsi', 'Rhsim03G0031800' => 'rsi', 'Rhsim05G0108800' => 'rsi', 'Rhsim06G0035400' => 'rsi', 'Rhsim07G0236500' => 'rsi', 'Rhsim08G0112900' => 'rsi', 'Rhsim10G0056600' => 'rsi', 'Rhsim10G0056800' => 'rsi', 'Rhsim10G0057000' => 'rsi', 'Rhsim10G0057100' => 'rsi', 'Rhsim13G0064900' => 'rsi', 'Sabra05G0103300' => 'sbr', 'Sabra07G0025000' => 'sbr', 'Sabra14G0031100' => 'sbr', 'Sabra16G0175700' => 'sbr', 'Sabra16G0251200' => 'sbr', 'SalBow1G1377' => 'sbo', 'SalBow3G0233' => 'sbo', 'SalBow3G4472' => 'sbo', 'SalBow5G5523' => 'sbo', 'SalBow8G1170' => 'sbo', 'SalBow8G4580' => 'sbo', 'Sc03g0000880' => 'sci', 'Sc07g0000230' => 'sci', 'Sc15g0006840' => 'sci', 'Sc18g0004010' => 'sci', 'Sc21g0005250' => 'sci', 'Sed0008777' => 'sed', 'Sed0011033' => 'sed', 'Sed0013761' => 'sed', 'Sed0016389' => 'sed', 'Sed0017856' => 'sed', 'Sed0019826' => 'sed', 'Sed0024575' => 'sed', 'Sed0025767' => 'sed', 'Sed0026058' => 'sed', 'Sed0027077' => 'sed', 'SEGI_04049' => 'sgi', 'SEGI_25525' => 'sgi', 'SEGI_39915' => 'sgi', 'SGA_v2.0_scaffold105G30343' => 'sas', 'SGA_v2.0_scaffold189G40340' => 'sas', 'SGA_v2.0_scaffold276G46654' => 'sas', 'SGA_v2.0_scaffold33G13384' => 'sas', 'SGA_v2.0_scaffold83G26285' => 'sas', 'SHI08197' => 'shi', 'SMO347G0379' => 'smo', 'SMO358G0383' => 'smo', 'Solyc01g081000.3' => 'sly', 'Solyc01g105020.3' => 'sly', 'Solyc04g025640.1' => 'sly', 'Solyc04g080090.4' => 'sly', 'Solyc06g007350.4' => 'sly', 'Solyc07g064310.2' => 'sly', 'Solyc07g064390.1' => 'sly', 'Solyc09g010590.1' => 'sly', 'Solyc10g079180.2' => 'sly', 'Solyc12g005190.3' => 'sly', 'Solyc12g026410.1' => 'sly', 'Solyc12g044540.3' => 'sly', 'Solyc12g089090.2' => 'sly', 'Sopen01g032580' => 'spe', 'Sopen01g047550' => 'spe', 'Sopen04g033680' => 'spe', 'Sopen06g002280' => 'spe', 'Sopen07g032460' => 'spe', 'Sopen07g032590' => 'spe', 'Sopen10g029830' => 'spe', 'Sopen12g001180' => 'spe', 'Sopen12g012040' => 'spe', 'Sopen12g030970' => 'spe', 'Sp2g29980' => 'spa', 'Sp4g12770' => 'spa', 'Sp7g15200' => 'spa', 'Sp7g31240' => 'spa', 'TAR376G0857' => 'tar', 'TAR381G0386' => 'tar', 'TAR381G0441' => 'tar', 'TAR381G0516' => 'tar', 'TAR381G0725' => 'tar', 'TAR381G1129' => 'tar', 'TAR623G1192' => 'tar', 'TAR629G0866' => 'tar', 'THA.LOC104800772' => 'tha', 'THA.LOC104807162' => 'tha', 'THA.LOC104819218' => 'tha', 'THA.LOC104825637' => 'tha', 'THA.LOC104826899' => 'tha', 'Thecc.01G039400' => 'tca', 'Thecc.02G094800' => 'tca', 'Thecc.02G142000' => 'tca', 'Thecc.03G300900' => 'tca', 'Thecc.08G023500' => 'tca', 'Thecc.09G356900' => 'tca', 'Thecc.10G121600' => 'tca', 'Thecc.10G125500' => 'tca', 'Thhalv10004287m.g' => 'esa', 'Thhalv10016997m.g' => 'esa', 'Thhalv10024559m.g' => 'esa', 'Thhalv10025106m.g' => 'esa', 'TPR.G13615' => 'tpr', 'TPR.G18821' => 'tpr', 'TPR.G25242' => 'tpr', 'TPR.G27221' => 'tpr', 'TPR.G29749' => 'tpr', 'TPR.G30563' => 'tpr', 'TPR.G35618' => 'tpr', 'TPR.G3596' => 'tpr', 'TPR.G623' => 'tpr', 'TWI09G0154' => 'twi', 'TWI14G0065' => 'twi', 'TWI14G0486' => 'twi', 'TWI31G1021' => 'twi', 'TWI34G0216' => 'twi', 'TWI36G1170' => 'twi', 'TWI38G1599' => 'twi', 'TWI38G2192' => 'twi', 'TWI53G1506' => 'twi', 'TWI56G0395' => 'twi', 'TWI59G1229' => 'twi', 'TWI79G1460' => 'twi', 'unitig_21.g20162' => 'ugi', 'unitig_60.g25706' => 'ugi', 'unitig_744.g24599' => 'ugi', 'unitig_8.g3474' => 'ugi', 'unitig_899.g14499' => 'ugi', 'vmacro02924' => 'vma', 'vmacro04512' => 'vma', 'vmacro11336' => 'vma', 'vmacro17859' => 'vma', 'vmacro17860' => 'vma', 'vmacro19922' => 'vma', 'vmacro20340' => 'vma', 'vmacro21625' => 'vma', 'vmacro21948' => 'vma', 'vmacro21949' => 'vma', 'vmacro21950' => 'vma', 'VMungo0251G2369' => 'vmu', 'VMungo0540G0665' => 'vmu', 'VMungo0540G0817' => 'vmu', 'VMungo0647G0882' => 'vmu', 'VMungo1215G0633' => 'vmu', 'VMungo1383G3071' => 'vmu', 'Zm00001eb061960' => 'zma', 'Zm00001eb123430' => 'zma', 'Zm00001eb185410' => 'zma', 'Zm00001eb185430' => 'zma', 'Zm00001eb185440' => 'zma', 'Zm00001eb212400' => 'zma', 'Zm00001eb223950' => 'zma', 'Zm00001eb248100' => 'zma', 'Zm00001eb392820' => 'zma', 'Zm00001eb401240' => 'zma' ) $gf_id = 'HOM05D000808' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000808' ) $data_identifier = 'HOM05D000808' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 11, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 15, 'amhyb' => (int) 1, 'aly' => (int) 4, 'aox' => (int) 7, 'arhy' => (int) 14, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 19, 'cqu' => (int) 6, 'bca' => (int) 10, 'bol' => (int) 3, 'bra' => (int) 6, 'can' => (int) 20, 'cansat' => (int) 13, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 9, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 8, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 5, 'cav' => (int) 11, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 12, 'lja' => (int) 4, 'lsa' => (int) 4, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 11, 'ama' => (int) 3, 'nta' => (int) 24, 'nnu' => (int) 3, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 14, 'pgr' => (int) 4, 'stu' => (int) 15, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 13, 'sbr' => (int) 5, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 13, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 8, 'esa' => (int) 4, 'tpr' => (int) 9, 'twi' => (int) 12, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401240' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1